Location
The workshop was held at the North Carolina Biotechnology Center, a short walk from SAMSI.
Description
The purpose of the workshop was to introduce the topics of the program and to identify research themes that will be developed in working groups over the length of the program.
Questions: email [email protected]
Schedule and Supporting Media
Participant List
Speakers Titles/Abstracts
Poster Titles
Pictures
Monday September 8, 2014
Hamner Conference Center
| Time | Description | Speaker | Slides | Videos |
|---|---|---|---|---|
| 8:00-8:45 | Registration | |||
| 8:45-9:00 | Introduction and Welcome | Richard Smith, SAMSI | ||
| General Overview Lectures | Chair: Katerina Kechris, University of Colorado-Denver |
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| 9:00-10:15 | Wanted: Large Complex `Omic Data Seeking Quantitative Reasoning and Analysis | Rebecca Doerge, Purdue University | video | |
| 10:15-10:45 | Break | |||
| 10:45-12:15 | High Dimensional Data Integration | Susan Holmes, Stanford University | video | |
| 12:15-1:45 | Lunch (Galleria) | |||
| 1:45-3:00 | Human Genome Analysis | Mark Gerstein, Yale University | video | |
| 3:00-3:30 | Break | |||
| 3:30-4:45 | Statistical and Mathematical Bioinformatics: Past, Present and Future (one person’s view) | Terry Speed, UC-Berkeley, and Walter and Eliza Hall Institute of Medical Research (Australia) | video | |
| 4:45-5:00 | Discussion | |||
| 5:00-7:00 | Poster Session and Reception |
Tuesday, September 9, 2014
Hamner Conference Center
| Time | Description | Speaker | Slides | Videos |
|---|---|---|---|---|
| 8:45-9:00 | Registration and Announcements | |||
| Evolutionary Bioinformatics | Chair: Jeff Thorne, North Carolina State University |
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| 9:00-9:45 | Multispecies Coalescent and its use in Population Genetic Inference from Genomic Data | Ziheng Yang, University College London | video | |
| 9:45-10:30 | Species-Level Phylogenetic Inference using Large-Scale Sequence Data | Laura Kubatko, Ohio State University | video | |
| 10:30-11:00 | Break | |||
| 11:00-11:45 | Epistasis, Convergence, and the Evolutionary Stokes Shift | David Pollack, University of Colorado-Denver | video | |
| 11:45-12:00 | Discussion | |||
| 12:00-1:15 | Lunch (Galleria) | |||
| Epigenetics | Chair: Shili Lin , Ohio State University |
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| 1:15-2:00 | Statistical Analysis of Illumina Human Methylation 450 Bead Arrays | Kim Siegmund, University of Southern California | video | |
| 2:00-2:45 | Statistical Analysis of Epigenomewide Data | Kasper Hansen, Johns Hopkins University | video | |
| 2:45-3:30 | Bayesian Inference of Three-Dimensional Chromosomal Organization from Hi-C Data | Jun Liu, Harvard University | video | |
| 3:30-3:45 | Discussion | |||
| 3:45-4:15 | Break | |||
| 4:15-5:15 | Panel: “Role of the Mathematical Sciences in Bioinformatics Education” | Moderator: Karin Dorman, Iowa State University Claudia Neuhauser, University of Minnesota Susmita Datta, University of Louisville Curtis Huttenhower, Harvard University |
pdf |
video |
Wednesday, September 10, 2014
Hamner Conference Center
| Time | Description | Speaker | Slides | Videos |
|---|---|---|---|---|
| 8:50-9:00 | Announcements | |||
| Metagenomics | Chair: Alex Aleseyenko, New York University |
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| 9:00-9:45 | Changing Paradigms of the Vaginal Microbiome in Health, Disease and Pregnancy | Greg Buck, Virginia Commonwealth University | video | |
| 9:45-10:30 | Identifying Personal Microbiomes Using Metagenomic Codes | Curtis Huttenhower, Harvard University | video | |
| 10:30-11:00 | Break | |||
| 11:00-11:45 | Microbiome, Metagenomics and High Dimensional Composiitonal Data Analysis | Hongzhe Li, University of Pennsylvania | video | |
| 11:45-12:00 | Discussion | |||
| 12:00-1:15 | Lunch (Galleria) | |||
| High-dimensional Data Integration | Chair: Dan Nettleton, Iowa State University |
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| 1:15-2:00 | An Integrative Exploratory Analysis of –Omics Data from the ICGC Lung Cancer Data | Susmita Datta, University of Louisville | video | |
| 2:00-2:45 | Bayesian Models for Integrative Genomics | Marina Vannucci, Rice University | video | |
| 2:45-3:30 | Bayesian Models for “Integromics” | Veera Baladandayuthapani, University of Texas, MD Anderson Cancer Center | video | |
| 3:30-3:45 | Discussion | |||
| 3:45-4:15 | Break | |||
| 4:15-5:15 | Panel: “Practices for Reproducible Research in Bioinformatics” | Moderator: Susan Holmes, Stanford University Keith Baggerly, Univ of Texas, MD Anderson Cancer Center Vincent Carey, Harvard University Elizabeth Purdom, University of California-Berkeley |
pdf |
video |
Thursday, September 11, 2014
Hamner Conference Center
| Time | Description | Speaker | Slides | Videos |
|---|---|---|---|---|
| 8:50-9:00 | Announcements | |||
| High-dimensional Data Integration (continued) | Chair: David Dunson, Duke University |
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| 9:00-9:45 | Joint Ranking of Micro-Rnas and Pathways from Matched Mirna and Mrna Data | Jean Yang, University of Sydney | video | |
| 9:45-10:30 | Kernel Machine Methods for Genomics Studies | Debashis Ghosh, Universtity of Colorado Public Health | video | |
| 10:30-10:45 | Discussion | |||
| 10:45-11:00 | Break | |||
| 11:00-12:00 | Short Overview of Working Groups – working group leaders | |||
| 12:00-1:30 | Lunch (Galleria) | |||
| 1:30-5:00 | Working Group Formation and Initial Meetings |
Friday, September 12, 2014
Hamner Conference Center
| Time | Description | Speaker | Slides | Videos |
|---|---|---|---|---|
| 9:00-12:00 | Working Group Meetings | |||
| 12:00-1:00 | Lunch (Galleria) | |||
| 1:00 | Adjourn |